Distributions¶
SciPy-shaped distributions. Each generator is used directly
(norm.rvs(key, loc, scale)) or frozen with fixed parameters
(norm(loc=..., scale=...)).
Base classes¶
probjax.stats.rv_generic
¶
Bases: ABC
Generic random variable class for common functionality.
Source code in probjax/stats/base.py
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freeze
¶
from_params
¶
Create a frozen distribution from name-keyed parameters.
Source code in probjax/stats/base.py
params_to_unconstrained
classmethod
¶
Map constrained parameters to an optimization-friendly pytree.
Source code in probjax/stats/base.py
params_from_unconstrained
classmethod
¶
Map unconstrained parameters back to their declared supports.
Source code in probjax/stats/base.py
rvs
¶
Random variates of given shape.
Calls through the rv_p primitive so traced execution records a random
variable site while eager execution remains a direct sample.
Source code in probjax/stats/base.py
support
abstractmethod
classmethod
¶
mean
classmethod
¶
mode
classmethod
¶
var
classmethod
¶
std
classmethod
¶
cdf
classmethod
¶
logpdf
abstractmethod
classmethod
¶
logcdf
classmethod
¶
Log of the cumulative distribution function at x of the given RV.
sf
classmethod
¶
Survival function (1 - cdf) at x of the given RV.
logsf
classmethod
¶
ppf
classmethod
¶
isf
classmethod
¶
entropy
classmethod
¶
median
classmethod
¶
interval
classmethod
¶
Confidence interval with equal areas around the median.
Source code in probjax/stats/base.py
moment
classmethod
¶
n-th non-central moment of the distribution.
Parameters¶
n : int Order of the moment args : array_like Shape parameters for the distribution *kwds : dict, optional Additional parameters (loc, scale, etc.)
Returns¶
moment : float or ndarray n-th non-central moment
Source code in probjax/stats/base.py
skew
classmethod
¶
Skewness of the distribution.
Parameters¶
args : array_like Shape parameters for the distribution *kwds : dict, optional Additional parameters (loc, scale, etc.)
Returns¶
skew : float or ndarray Skewness of the distribution
Source code in probjax/stats/base.py
kurtosis
classmethod
¶
Kurtosis of the distribution.
Parameters¶
args : array_like Shape parameters for the distribution *kwds : dict, optional Additional parameters (loc, scale, etc.)
Returns¶
kurtosis : float or ndarray Kurtosis of the distribution (Fisher's definition, kurtosis - 3)
Source code in probjax/stats/base.py
fit
classmethod
¶
Maximum likelihood estimation of distribution parameters.
Parameters¶
data : array_like Data to fit the distribution to **kwds : dict, optional Additional parameters for the optimization
Returns¶
params : tuple The fitted parameters of the distribution
Source code in probjax/stats/base.py
fit_params
classmethod
¶
Fit and return parameters keyed by their declared names.
Source code in probjax/stats/base.py
probjax.stats.rv_continuous
¶
Bases: rv_generic
Base class for continuous random variables.
Source code in probjax/stats/base.py
probjax.stats.rv_discrete
¶
Bases: rv_generic
Base class for discrete random variables.
Source code in probjax/stats/base.py
probjax.stats.rv_multivariate
¶
Bases: rv_continuous
Base class for multivariate continuous random variables.
Source code in probjax/stats/base.py
freeze
¶
Freeze the multivariate distribution for the given arguments.
Source code in probjax/stats/base.py
probjax.stats.rv_frozen
¶
Bases: DistributionAPI
Source code in probjax/stats/base.py
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unconstrained_params
property
¶
Name-keyed parameters mapped through the constraint registry.
tree_flatten
¶
Return a flattened representation for JAX pytree.
Source code in probjax/stats/base.py
tree_unflatten
classmethod
¶
Reconstruct an instance from flattened representation.
Source code in probjax/stats/base.py
cdf
¶
Cumulative distribution function (i.e. P(X <= x)).
Parameters¶
x : array_like Points at which to evaluate the cumulative distribution function.
Returns¶
cdf : ndarray or scalar Cumulative distribution function evaluated at x
Source code in probjax/stats/base.py
logcdf
¶
Log of the cumulative distribution function (i.e. log(P(X <= x))).
Parameters¶
x : array_like Points at which to evaluate the cumulative distribution function.
Returns¶
logcdf : ndarray or scalar Log of the cumulative distribution function evaluated at x
Source code in probjax/stats/base.py
ppf
¶
Percent point function (inverse of cdf).
Parameters¶
q : array_like Probability at which to evaluate the inverse cumulative distribution function.
Returns¶
ppf : ndarray or scalar Percent point function evaluated at q
Source code in probjax/stats/base.py
isf
¶
rvs
¶
Random variates of the frozen distribution.
Parameters¶
rng : jax.random.PRNGKey The random key used for sampling shape : tuple of ints, optional The shape of the samples to draw. Default is (). name : str, optional Optional site name used when tracing probabilistic programs.
Returns¶
rvs : ndarray or scalar Random variates of given shape
Source code in probjax/stats/base.py
sf
¶
logsf
¶
stats
¶
Returns mean, variance, skew, or kurtosis of the frozen distribution.
Parameters¶
moments : str, optional Which moments to compute: 'mv' (default), 'v', 's', 'k'.
Returns¶
stats : ndarray or scalar Mean, variance, skew, or kurtosis of the distribution
Source code in probjax/stats/base.py
median
¶
mean
¶
var
¶
std
¶
moment
¶
entropy
¶
interval
¶
Confidence interval with equal areas around the median of the distribution.
Parameters¶
confidence : array_like, optional Confidence level for the interval. Default is 0.95.
Returns
Source code in probjax/stats/base.py
probjax.stats.rv_exponential_family
¶
Bases: rv_generic
Base class for exponential family random variables.
Source code in probjax/stats/base.py
probjax.stats.rv_spherical
¶
Bases: rv_multivariate
Base class for spherical distributions on the unit sphere.
Source code in probjax/stats/base.py
freeze
¶
Freeze the spherical distribution for the given arguments.
Source code in probjax/stats/base.py
mean_direction_vector
abstractmethod
classmethod
¶
mean_direction_dyad
abstractmethod
classmethod
¶
dispersion
classmethod
¶
Dispersion matrix defined as :math:E[XX^T] - I/d.
Source code in probjax/stats/base.py
axial_dispersion
classmethod
¶
Dispersion along the principal axis :math:1 - mu^T E[XX^T] mu.
Source code in probjax/stats/base.py
Continuous¶
Flexible univariate families¶
Parameterised densities intended as conditional heads for autoregressive models, or as flexible marginals in their own right.
probjax.stats.mixture_kernel
module-attribute
¶
probjax.stats.logistic_mixture_kernel
module-attribute
¶
probjax.stats.tailed_histogram
module-attribute
¶
probjax.stats.spline_normal
module-attribute
¶
Multivariate and directional¶
probjax.stats.multivariate_normal
module-attribute
¶
Discrete¶
probjax.stats.empirical
¶
Bases: rv_discrete
An Empirical distribution that puts probability mass on observed data points.
Source code in probjax/stats/discrete/empirical.py
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support
classmethod
¶
pmf
classmethod
¶
Probability mass function of the Empirical distribution.
Source code in probjax/stats/discrete/empirical.py
logpmf
classmethod
¶
Log probability mass function of the Empirical distribution.
cdf
classmethod
¶
Cumulative distribution function of the Empirical distribution.
Source code in probjax/stats/discrete/empirical.py
ppf
classmethod
¶
Percent point function of the Empirical distribution.
Source code in probjax/stats/discrete/empirical.py
mean
classmethod
¶
Mean of the Empirical distribution.
var
classmethod
¶
Variance of the Empirical distribution.
Source code in probjax/stats/discrete/empirical.py
entropy
classmethod
¶
Entropy of the Empirical distribution.
mode
classmethod
¶
Mode of the Empirical distribution.
freeze
¶
Freeze the Empirical distribution with the given parameters.
Higher-order¶
probjax.stats.transformed
¶
Transformed Distribution (:mod:probjax.stats.transformed)¶
This module implements transformed distributions that apply a bijective transformation to a base distribution.
transformed_frozen
¶
Bases: rv_continuous_frozen
Frozen transformed distribution with base-shape metadata.
Source code in probjax/stats/transformed.py
transformed_gen
¶
Bases: rv_continuous
A transformed distribution that applies a bijective transformation to a base distribution.
Source code in probjax/stats/transformed.py
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freeze
¶
Freeze the transformed distribution with the given parameters.
support
classmethod
¶
logpdf
classmethod
¶
Log probability density function of the transformed distribution.
Source code in probjax/stats/transformed.py
pdf
classmethod
¶
Probability density function of the transformed distribution.
cdf
classmethod
¶
Cumulative distribution function of the transformed distribution.
Source code in probjax/stats/transformed.py
ppf
classmethod
¶
Percent point function of the transformed distribution.
Source code in probjax/stats/transformed.py
mean
classmethod
¶
var
classmethod
¶
entropy
classmethod
¶
Entropy of the transformed distribution.
mode
classmethod
¶
probjax.stats.mixture
¶
Mixture Distribution (:mod:probjax.stats.mixture)¶
This module implements mixture distributions that combine multiple component distributions with mixing probabilities.
mixture_frozen
¶
Bases: rv_continuous_frozen, rv_discrete_frozen
Frozen mixture distribution.
Source code in probjax/stats/mixture.py
mixture_gen
¶
Bases: rv_generic
A mixture distribution that combines multiple component distributions.
Source code in probjax/stats/mixture.py
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freeze
¶
Freeze the mixture distribution with the given parameters.
support
classmethod
¶
Get the support of the mixture distribution.
Source code in probjax/stats/mixture.py
logpdf
classmethod
¶
Log probability density function of the mixture distribution.
Source code in probjax/stats/mixture.py
cdf
classmethod
¶
Cumulative distribution function of the mixture distribution.
Source code in probjax/stats/mixture.py
ppf
classmethod
¶
Percent point function of the mixture distribution.
Source code in probjax/stats/mixture.py
mean
classmethod
¶
Mean of the mixture distribution.
var
classmethod
¶
Variance of the mixture distribution.
Source code in probjax/stats/mixture.py
mode
classmethod
¶
Mode of the mixture distribution (supports univariate mixtures).
Source code in probjax/stats/mixture.py
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entropy
classmethod
¶
fit
classmethod
¶
Fit a finite mixture model with analytic weighted M-steps.
Source code in probjax/stats/mixture.py
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probjax.stats.indep
¶
Independent Distribution (:mod:probjax.stats.indep)¶
This module contains the Independent distribution, which treats a distribution as a batch of independent distributions.
rv_frozen_indep
¶
Bases: rv_continuous_frozen
Frozen independent distribution.
Source code in probjax/stats/indep.py
indep_gen
¶
Bases: rv_generic
Independent random variable.
Creates an independent distribution by treating the provided distribution as a batch of independent distributions.
Parameters¶
*base_dists : rv_continuous_frozen Base distribution(s) to make independent. reinterpreted_batch_ndims : int, optional The number of batch dimensions that should be considered as event dimensions. Default is 1.
Source code in probjax/stats/indep.py
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freeze
¶
Freeze the independent distribution with the given parameters.
Source code in probjax/stats/indep.py
support
classmethod
¶
Support of the independent distribution.
Source code in probjax/stats/indep.py
pdf
classmethod
¶
Probability density function of the independent distribution.
logpdf
classmethod
¶
Log of the probability density function of the independent distribution.
Source code in probjax/stats/indep.py
cdf
classmethod
¶
Cumulative distribution function of the independent distribution.
Source code in probjax/stats/indep.py
mean
classmethod
¶
Mean of the independent distribution.
Source code in probjax/stats/indep.py
var
classmethod
¶
Variance of the independent distribution.
Source code in probjax/stats/indep.py
entropy
classmethod
¶
Entropy of the independent distribution.
Source code in probjax/stats/indep.py
mode
classmethod
¶
Mode of the independent distribution.
Source code in probjax/stats/indep.py
fit
classmethod
¶
Fit the independent distribution to data.
Parameters¶
data : ArrayLike The data to fit the distribution to. base_dists : Sequence[rv_continuous_frozen] The base distributions to fit. reinterpreted_batch_ndims : int, optional The number of batch dimensions that should be considered as event dimensions. Default is 1. **kwargs Additional keyword arguments passed to each base distribution's fit method.
Returns¶
Sequence[rv_continuous_frozen] The fitted base distributions.
Source code in probjax/stats/indep.py
determine_shapes
¶
Helper function to determine shapes for Independent distribution.
Source code in probjax/stats/indep.py
Fitting¶
probjax.stats.fit
¶
Gradient-based fitting (:mod:probjax.stats.fit)¶
A framework-agnostic training loop: :func:fit minimizes any
loss_fn(params, rng, batch) over a params pytree with optax, where
batch is either one batch -- a bare array, or a dict such as
{"data": x, "context": c} whose leaves share the leading example axis --
or an iterable of batches, for data that does not fit in memory:
params, losses = fit(loss_fn, params, key, {"data": x}) # whole array params, losses = fit(loss_fn, params, key, my_dataloader) # streamed
Nothing here assumes a particular NN library. The loop is a single
jax.lax.scan: it compiles once no matter how many steps are requested, and
runs end to end without returning to Python -- a streamed batch arrives through
an ordered io_callback, and on_step reports progress the same way.
Module-backed models (the families in :mod:probjax.nn.generative) get the
convenient model.fit(rng, data) via :class:FitMixin, which lazily builds
the pure loss_fn + params from the module once per instance:
flow = maf(2, 5, rngs=nnx.Rngs(0)) losses = flow.fit(jax.random.key(0), samples) flow.logpdf(samples) # trained in place
This is the object-layer counterpart of the scipy-style classmethod
rv_generic.fit (closed-form / optimizer MLE for parametric families).
FitMixin
¶
Adds model.fit(rng, data, ...) for modules with a loss method.
Source code in probjax/stats/fit.py
fit
¶
Train this model in place; returns per-step losses.
Source code in probjax/stats/fit.py
is_batch_stream
¶
Whether data is an iterable of batches rather than one batch pytree.
Both readings are pytrees, so nothing about the structure separates a list of batches from one batch made of several arrays. Rather than guess from shapes -- which fails silently and in whichever direction the guess went -- the rule is fixed and stated:
- a bare array or a dict is one batch;
- a list or tuple is a sequence of batches;
- anything else with
__iter__or__next__(a generator, aDataLoader) is a stream of batches.
So a single batch that groups several arrays must be a dict --
{"data": x, "context": c} -- not a tuple.
Source code in probjax/stats/fit.py
take_batches
¶
The first count batches of source, restarting it if it is short.
Exposed for callers that must see some data before training starts -- fitting a standardising transform, say -- without giving up the ability to train on the same iterable afterwards.
Source code in probjax/stats/fit.py
fit
¶
fit(loss_fn, params, rng, batch, *, num_steps='auto', batch_size='auto', learning_rate=0.001, schedule='constant', clip_norm=10.0, optimizer=None, on_step=None, log_every=1)
Minimize loss_fn over params with minibatch gradient descent.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
loss_fn
|
|
required | |
params
|
Pytree of trainable parameters. |
required | |
rng
|
RngKey
|
PRNG key consumed for minibatching and the per-step loss. |
required |
batch
|
object
|
Either one batch -- a bare array, or a dict of arrays such as
|
required |
num_steps
|
int | Literal['auto']
|
Number of gradient steps, or |
'auto'
|
batch_size
|
int | None | Literal['auto']
|
Minibatch size, or |
'auto'
|
learning_rate
|
float
|
Adam learning rate, used when |
0.001
|
schedule
|
Schedule
|
|
'constant'
|
clip_norm
|
Optional[float]
|
Global gradient-norm clip; |
10.0
|
optimizer
|
Optional |
None
|
|
on_step
|
Optional |
None
|
|
log_every
|
int
|
Cadence for |
1
|
Returns:
| Type | Description |
|---|---|
object
|
|
Array
|
or is truncated at the stopping step if |
Warns:
| Type | Description |
|---|---|
RuntimeWarning
|
if any step produced a non-finite loss. The parameters are returned as-is rather than repaired -- once a NaN gradient has been applied the run is dead, and silently continuing would hide it. |
Note
The loop is a single jax.lax.scan, so it compiles once regardless of
num_steps and runs without returning to Python. Two consequences:
losses arrive only when the run finishes rather than step by step (use
on_step to watch it live), and a diverged run still executes its
remaining iterations.
Source code in probjax/stats/fit.py
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probjax.stats.FitMixin
¶
Adds model.fit(rng, data, ...) for modules with a loss method.
Source code in probjax/stats/fit.py
fit
¶
Train this model in place; returns per-step losses.
Source code in probjax/stats/fit.py
probjax.stats.is_batch_stream
¶
Whether data is an iterable of batches rather than one batch pytree.
Both readings are pytrees, so nothing about the structure separates a list of batches from one batch made of several arrays. Rather than guess from shapes -- which fails silently and in whichever direction the guess went -- the rule is fixed and stated:
- a bare array or a dict is one batch;
- a list or tuple is a sequence of batches;
- anything else with
__iter__or__next__(a generator, aDataLoader) is a stream of batches.
So a single batch that groups several arrays must be a dict --
{"data": x, "context": c} -- not a tuple.
Source code in probjax/stats/fit.py
probjax.stats.take_batches
¶
The first count batches of source, restarting it if it is short.
Exposed for callers that must see some data before training starts -- fitting a standardising transform, say -- without giving up the ability to train on the same iterable afterwards.
Source code in probjax/stats/fit.py
Transform protocols¶
Used to build higher-order distributions and normalizing flows.
probjax.stats.TransformedDistribution
¶
Bases: DistributionAPI
Push a base :class:DistributionAPI through a transform.
Sampling applies the forward transform to base samples; logpdf uses
the change-of-variables formula with the transform's inverse (explicit
or auto-derived).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
base
|
DistributionAPI
|
Base distribution (anything satisfying |
required |
transform
|
Forward callable, optionally satisfying
:class: |
required | |
event_shape
|
Optional[Tuple[int, ...]]
|
Override when the transform changes the event shape; defaults to the base distribution's event shape. |
None
|
Source code in probjax/stats/bijective/protocols.py
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probjax.stats.forward_and_logdet
¶
Compute y = T(x) and log |det dT/dx| at x.
Uses transform.forward_and_logdet if the transform provides it;
otherwise evaluates the (possibly auto-derived) inverse log-determinant
at y and negates it.
Source code in probjax/stats/bijective/protocols.py
probjax.stats.ensure_invertible
¶
Return transform if it satisfies :class:InvertibleTransformProtocol,
otherwise wrap the forward callable with an auto-derived inverse.